GEO DataSets

(Submitter supplied) Lacticaseibacillus rhamnosus Lcr35 is a well-known bacterial strain whose efficiency in preventing recurrent vulvovaginal candidiasis has been largely demonstrated in clinical trials. The presence of sodium thiosulfate (STS) has been shown to enhance its ability to inhibit the growth of C. albicans strains. In this study, we confirmed that Lcr35 has a fungicidal effect not only on the planktonic form of C. more...

Organism:

Lacticaseibacillus rhamnosus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33752

9 Samples

Download data: TXT

(Submitter supplied) Carbapenem-resistant Acinetobacter baumannii (CRAB) is a recognized nosocomial pathogen with limited therapeutics options. Lactic acid bacteria (LAB) constitute a promising therapeutic alternative. Here we aimed to study the antibacterial properties of a collection of LAB strains using phenotypic and transcriptomic analysis against A. baumannii clinical strains. One strain, Lacticaseibacillus rhamnosus CRL 2244, exerts a strong inhibitory capacity on A. more...

Organism:

Acinetobacter baumannii; Lacticaseibacillus rhamnosus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL28641 GPL33555

6 Samples

Download data: TXT

(Submitter supplied) RIP-seq analysis to identify SpyCas9 and LrhCas9 bound RNAs using co-immunoprecipitation and sequencing.

Organism:

Escherichia coli; Lacticaseibacillus rhamnosus

Type:

Other

Platforms:

GPL30159 GPL21222

12 Samples

Download data: WIG

(Submitter supplied) To determine whether osmotic pressure affects the translation efficiency of Lactobacillus rhamnosus, the ribosome profiling assay was performed to analyze the changes in translation efficiency in L. rhamnosus ATCC 53103. Under osmotic stress, differentially expressed genes (DEGs) involved in fatty acid biosynthesis and metabolism, ribosome, and purine metabolism pathways were co-regulated with consistent expression direction at translation and transcription levels. more...

Organism:

Lacticaseibacillus rhamnosus GG

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL30958 GPL30959

6 Samples

Download data: TXT

(Submitter supplied) Lactobacillus rhamnosus GG has become one of the most widely marketed and studied probiotic strains. Several genes important for probiotic function have been identified, including the spaCBA-srtC1 gene cluster encoding pili, which have been shown to be important for certain of its probiotic properties. The spaCBA-srtC1 gene cluster has been reported to be unstable in L. rhamnosus GG isolated from liquid dairy products and therefore the present study examined the L. more...

Organism:

Lacticaseibacillus rhamnosus

Type:

Genome variation profiling by high throughput sequencing

Platform:

GPL25928

40 Samples

Download data: FASTA

(Submitter supplied) To understand transcriptional regulation of probiotic bacteria under acidic condition, RNAseq analysis was carried out over different growth conditions

Organism:

Lacticaseibacillus rhamnosus GG

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24302

9 Samples

Download data: CSV